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Clade-specific diversification dynamics of marine diatoms since the Jurassic

Eric Lewitus , Lucie Bittner , Shruti Malviya , Chris Bowler , Hélène Morlon
Nature Ecology & Evolution, 2018, 2 (11), pp.1715-1723. ⟨10.1038/s41559-018-0691-3⟩
Journal articles hal-02408145v1
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Cyclin G and the Polycomb Repressive complexes PRC1 and PR-DUB cooperate for developmental stability

Delphine Dardalhon-Cuménal , Jérôme Deraze , Camille Dupont , Valérie Ribeiro , Anne Coleno-Costes , et al.
PLoS Genetics, 2018, 14(7) (e1007498), ⟨10.1371/journal.pgen.1007498⟩
Journal articles hal-01921636v1
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A de novo approach to disentangle partner identity and function in holobiont systems

Arnaud Meng , Camille Marchet , Erwan Corre , Pierre Peterlongo , Adriana A. Alberti , et al.
Microbiome, 2018, pp.1-35. ⟨10.1101/221424⟩
Journal articles hal-01643153v2
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The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean

Flora J. Vincent , Sébastien Colin , Sarah Romac , Eleonora Scalco , Lucie Bittner , et al.
ISME Journal, 2018, 12 (4), pp.1094 - 1108. ⟨10.1038/s41396-017-0029-1⟩
Journal articles hal-01762501v1

Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype

Anne-Cécile Boulay , Alice Gilbert , Vanessa Oliveira Moreira , Corinne Blugeon , Sandrine Perrin , et al.
Brain Sciences, 2018, 8 (4), ⟨10.3390/brainsci8040050⟩
Journal articles hal-02879306v1

Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network.

Arnaud Meng , Erwan Corre , Ian Probert , Andres Gutierrez-Rodriguez , Raffaele Siano , et al.
Molecular Ecology, 2018, 27 (10), pp.2365-2380. ⟨10.1111/mec.14579⟩
Journal articles hal-02879300v1
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Meet-U: educating through research immersion

Nika Abdollahi , Alexandre Albani , Eric Anthony , Agnes Baud , Mélissa Cardon , et al.
PLoS Computational Biology, 2018, 14 (3), pp.1-10. ⟨10.1371/journal.pcbi.1005992⟩
Journal articles hal-01722019v1
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Increased Fatty Acid Oxidation in Differentiated Proximal Tubular Cells Surviving a Reversible Episode of Acute Kidney Injury

Aurélien Bataille , Pierre Galichon , Nadjim Chelghoum , Badreddine Mohand Oumoussa , Marie-Julia Ziliotis , et al.
Cellular Physiology and Biochemistry, 2018, 47 (4), pp.1338 - 1351. ⟨10.1159/000490819⟩
Journal articles hal-02565135v1
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Isolation and differential transcriptome of vascular smooth muscle cells and mid-capillary pericytes from the rat brain

Stéphanie Chasseigneaux , Yasmine Moraca , Véronique Cochois-Guégan , Anne-Cécile Boulay , Alice Gilbert , et al.
Scientific Reports, 2018, 8, pp.12272. ⟨10.1038/s41598-018-30739-5⟩
Journal articles hal-01868957v1
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Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface

Anne- Cécile Boulay , Bruno Saubaméa , Nicolas Adam , Stéphanie Chasseigneaux , Noémie Mazaré , et al.
Cell Discovery, 2017, 3 (1), pp.17005. ⟨10.1038/celldisc.2017.5⟩
Journal articles inserm-03823110v1

A transcriptomic approach to study marine plankton holobionts

Arnaud Meng , Erwan Corre , Pierre Peterlongo , Camille Marchet , Adriana A. Alberti , et al.
International Conference on Holobionts, Apr 2017, Paris, France
Conference papers hal-01575069v1
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Acclimation of a low iron adapted Ostreococcus strain to iron limitation through cell biomass lowering

Hugo Botebol , Gaëlle Lelandais , Christophe Six , Emmanuel Lesuisse , Arnaud Meng , et al.
Scientific Reports, 2017, 7 (1), pp.327. ⟨10.1038/s41598-017-00216-6⟩
Journal articles hal-01502140v1

Aozan: an automated post-sequencing data-processing pipeline

Sandrine Perrin , Cyril Firmo , Sophie Lemoine , Stephane Le Crom , Laurent Jourdren
Bioinformatics, 2017, pp.2212-2213. ⟨10.1093/bioinformatics/btx154⟩
Journal articles hal-01545317v1
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Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction

Ivanova Christa , Ramoni Jonas , Thiziri Aouam , Frischmann Alexa , Bernhard Seiboth , et al.
Biotechnology for Biofuels, 2017, 10, pp.209. ⟨10.1186/s13068-017-0897-7⟩
Journal articles hal-01592860v1

Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research

Guillem Chust , Meike Vogt , Fabio Benedetti , Teofil Nakov , Sébastien Villéger , et al.
Frontiers in Marine Science, 2017, 4, pp.68. ⟨10.3389/fmars.2017.00068⟩
Journal articles hal-01545318v1

Insights into global diatom distribution and diversity in the world's ocean

Shruti Malviya , Eleonora Scalco , Stephane Audic , Flora Vincenta , Alaguraj Veluchamy , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (11), pp.E1516-E1525. ⟨10.1073/pnas.1509523113⟩
Journal articles hal-01545320v1
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Plankton networks driving carbon export in the oligotrophic ocean

Lionel Guidi , Samuel Chaffron , Lucie Bittner , Damien Eveillard , Abdelhalim Larhlimi , et al.
Nature, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩
Journal articles hal-01275276v1
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Benthic protists: the under-charted majority

Dominik Forster , Micah Dunthorn , Fréderic Mahé , John R. Dolan , Stéphane Audic , et al.
FEMS Microbiology Ecology, 2016, 92 (8), pp.fiw120. ⟨10.1093/femsec/fiw120⟩
Journal articles hal-01383722v1
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A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata

Jawad Merhej , Antonin Thiebaut , Corinne Blugeon , Juliette Pouch , Mohammed El Amine Ali Chaouche , et al.
Frontiers in Microbiology, 2016, 7, pp.645. ⟨10.3389/fmicb.2016.00645⟩
Journal articles hal-01323791v1

Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing

Elianne Sirnaes Egge , Torill Vik Johannessen , Tom Andersen , Wenche Eikrem , Lucie Bittner , et al.
Molecular Ecology, 2015, 24 (12), pp.3026-3042. ⟨10.1111/mec.13160⟩
Journal articles hal-01545321v1
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Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype

Alexander Lichius , Frédérique Bidard , Franziska Buchholz , Stéphane Le Crom , Joel Martin , et al.
BMC Genomics, 2015, 16 (1), pp.326. ⟨10.1186/s12864-015-1526-0⟩
Journal articles hal-01149671v1
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Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms

Dominik Forster , Lucie Bittner , Slim Karkar , Micah Dunthorn , Sarah Romac , et al.
BMC Biology, 2015, 13 (1), pp.16. ⟨10.1186/s12915-015-0125-5⟩
Journal articles hal-01144173v1
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Eukaryotic plankton diversity in the sunlit ocean

Noan Le Bescot , Ian Probert , Margaux Carmichael , Julie Poulain , Sarah Romac , et al.
Science, 2015, 348 (6237), pp.1261605. ⟨10.1126/science.1261605⟩
Journal articles hal-01253979v1
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

Ramon Massana , Angélique Gobet , Stéphane Audic , David Bass , Lucie Bittner , et al.
Environmental Microbiology, 2015, 17 (10), pp.4035-4049. ⟨10.1111/1462-2920.12955⟩
Journal articles hal-01191731v1

Determinants of community structure in the global plankton interactome

Gipsi Lima-Mendez , Karoline Faust , Nicolas Henry , Johan Decelle , Sébastien Colin , et al.
Science, 2015, 348 (6237), pp.1262073. ⟨10.1126/science.1262073⟩
Journal articles hal-01234200v1
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Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain

Dante Poggi-Parodi , Frédérique Bidard , Aurélie Pirayre , Thomas Portnoy , Corinne Blugeon , et al.
Biotechnology for Biofuels, 2014, 7, pp.173. ⟨10.1186/s13068-014-0173-z⟩
Journal articles hal-01112360v1

bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes

Jawad Merhej , Amandine Frigo , Stéphane Le Crom , Jean-Michel Camadro , Frédéric Devaux , et al.
Yeast, 2014, 31 (10), pp.375-91. ⟨10.1002/yea.3031⟩
Journal articles hal-01132624v1
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Patterns of Rare and Abundant Marine Microbial Eukaryotes

Ramiro Logares , Stéphane Audic , David Bass , Lucie Bittner , Christophe Boutte , et al.
Current Biology - CB, 2014, 24 (8), pp.813-821. ⟨10.1016/j.cub.2014.02.050⟩
Journal articles hal-01149637v1
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454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes

Elianne Egge , Lucie Bittner , Tom Andersen , Stéphane Audic , Colomban de Vargas , et al.
PLoS ONE, 2013, 8 (9), pp.e74371. ⟨10.1371/journal.pone.0074371⟩
Journal articles hal-01258226v1
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Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum

Alaguraj Veluchamy , Xin Lin , Florian Maumus , Maximo Rivarola , Jaysheel Bhavsar , et al.
Nature Communications, 2013, 4, pp.2091. ⟨10.1038/ncomms3091⟩
Journal articles hal-01545322v1