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authFullName_s : Antoine Margeot
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Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

Etienne Jourdier , Lyam Baudry , Dante Poggi-Parodi , Yoan Vicq , Romain Koszul , et al.
Biotechnology for Biofuels, 2017, 10 (1), pp.151. ⟨10.1186/s13068-017-0837-6⟩
Journal articles hal-01581813v1
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Insights into peculiar fungal LPMO family members holding a short C-terminal sequence reminiscent of phosphate binding motifs

Jean-Lou Reyre , Sacha Grisel , Mireille Haon , Ruite Xiang , Jean-Charles Gaillard , et al.
Scientific Reports, 2023, 13, pp.11586. ⟨10.1038/s41598-023-38617-5⟩
Journal articles hal-04164892v1
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Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype

Alexander Lichius , Frédérique Bidard , Franziska Buchholz , Stéphane Le Crom , Joel Martin , et al.
BMC Genomics, 2015, 16 (1), pp.326. ⟨10.1186/s12864-015-1526-0⟩
Journal articles hal-01149671v1
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The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation.

Thomas Portnoy , Antoine Margeot , Rita Linke , Lea Atanasova , Erzsébet Fekete , et al.
BMC Genomics, 2011, 12 (1), pp.269. ⟨10.1186/1471-2164-12-269⟩
Journal articles inserm-00663944v1

The cellulase induction system in Trichoderma reesei strains remains well conserved despite several generations of random mutagenesis and screening

Dante Poggi-Parodi , Aurelie Pirayre , Thomas Portnoy , Hugues Mathis , Thiziri Aouam , et al.
16th European Congress on Biotechnology, Jul 2014, Edinburgh, United Kingdom. 31 (S), pp.S216, 2014, ⟨10.1016/j.nbt.2014.05.1006⟩
Conference poster hal-01536636v1

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.

Stéphane Le Crom , Wendy Schackwitz , Len Pennacchio , Jon K. Magnuson , David Culley , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (38), pp.16151-6. ⟨10.1073/pnas.0905848106⟩
Journal articles hal-02879345v1
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Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain

Dante Poggi-Parodi , Frédérique Bidard , Aurélie Pirayre , Thomas Portnoy , Corinne Blugeon , et al.
Biotechnology for Biofuels, 2014, 7, pp.173. ⟨10.1186/s13068-014-0173-z⟩
Journal articles hal-01112360v1
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How molecular evolution technologies can provide bespoke industrial enzymes : application to biofuels.

Laurent Fourage , Jean-Marie Sonet , Frédéric Monot , Gilles Ravot , Antoine Margeot
Oil & Gas Science and Technology - Revue d'IFP Energies nouvelles, 2013, 68 (4), pp.681-691
Journal articles hal-00908958v1

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei.

Sara Ghassemi , Alexander Lichuis , Frederique Bidard , Sophie Lemoine , Marie-Noëlle Rossignol , et al.
Molecular Microbiology, 2015, 96 (2), pp.405-418. ⟨10.1111/mmi.12944⟩
Journal articles hal-01151126v1
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Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction

Ivanova Christa , Ramoni Jonas , Thiziri Aouam , Frischmann Alexa , Bernhard Seiboth , et al.
Biotechnology for Biofuels, 2017, 10, pp.209. ⟨10.1186/s13068-017-0897-7⟩
Journal articles hal-01592860v1
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Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance

Gabriel Paës , David Navarro , Yves Benoit , Senta Blanquet , Brigitte Chabbert , et al.
Biotechnology for Biofuels, 2019, 12 (1), ⟨10.1186/s13068-019-1417-8⟩
Journal articles hal-02152203v1
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Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Christian Kubicek , Alfredo Herrera-Estrella , Verena Seidl-Seiboth , Diego Martinez , Irina Druzhinina , et al.
Genome Biology, 2011, 12 (4), pp.R40. ⟨10.1186/gb-2011-12-4-r40⟩
Journal articles hal-02879334v1
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AA16, a new Lytic Polysaccharide Monooxygenase family identified in fungal secretomes

Camille Filiatrault-Chastel , David Navarro , Mireille Haon , Sacha Grisel , Isabelle Gimbert Herpoël-Gimbert , et al.
Biotechnology for Biofuels, 2019, 12 (1), ⟨10.1186/s13068-019-1394-y⟩
Journal articles hal-02117950v1
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High-quality genome (re)assembly using chromosomal contact data

Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Jean-François Flot , Gianni Liti , et al.
Nature Communications, 2014, 5, pp.5695. ⟨10.1038/ncomms6695⟩
Journal articles hal-01138788v1
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From fungal secretomes to enzymes cocktails: The path forward to bioeconomy

Camille Filiatrault-Chastel , Senta Heiss-Blanquet , Antoine Margeot , Jean-Guy Berrin
Biotechnology Advances, 2021, 52, pp.36. ⟨10.1016/j.biotechadv.2021.107833⟩
Journal articles hal-03398698v1
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Optimization of flow cytometry parameters for high-throughput screening of spores of the filamentous fungus Trichoderma reesei

H. Mathis , Antoine Margeot , M. Bouix
Journal of Biotechnology, 2020, 321, pp.78-86. ⟨10.1016/j.jbiotec.2020.05.015⟩
Journal articles hal-02955679v1

Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30

Aurélie Pirayre , Laurent Duval , Corinne Blugeon , Cyril Firmo , Sandrine Perrin , et al.
BMC Genomics, 2020, 21, pp.885. ⟨10.1186/s12864-020-07281-8⟩
Journal articles hal-02805426v1

Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments.

Laurent Jourdren , Aurelie Duclos , Christian Brion , Thomas Portnoy , Hugues Mathis , et al.
Nucleic Acids Research, 2010, 38 (10), pp.e117. ⟨10.1093/nar/gkq110⟩
Journal articles hal-02879340v1

The ß‐importin KAP 8 ( P se1/ K ap121) is required for nuclear import of the cellulase transcriptional regulator XYR 1, asexual sporulation and stress resistance in T richoderma reesei

Sara Ghassemi , Alexander Lichius , Fréderique Bidard , Sophie Lemoine , Marie‐noëlle Rossignol , et al.
Molecular Microbiology, 2015, 96 (2), pp.405-418. ⟨10.1111/mmi.12944⟩
Journal articles hal-03842675v1

Differential regulation of the cellulase transcription factors XYR1, ACE2, and ACE1 in Trichoderma reesei strains producing high and low levels of cellulase

Thomas Portnoy , Antoine Margeot , Verena Seidl-Seiboth , Stéphane Le Crom , Fadhel Ben Chaabane , et al.
Eukaryotic Cell, 2011, 10 (2), pp.262-71. ⟨10.1128/EC.00208-10⟩
Journal articles hal-02879336v1