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authFullName_s : Frédérique Bidard
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Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain

Dante Poggi-Parodi , Frédérique Bidard , Aurélie Pirayre , Thomas Portnoy , Corinne Blugeon , et al.
Biotechnology for Biofuels, 2014, 7, pp.173. ⟨10.1186/s13068-014-0173-z⟩
Journal articles hal-01112360v1
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BRANE Cut: Biologically-Related A priori Network Enhancement with Graph cuts for Gene Regulatory Network Inference

Aurélie Pirayre , Camille Couprie , Frédérique Bidard , Laurent Duval , Jean-Christophe Pesquet
BMC Bioinformatics, 2015, ⟨10.1186/s12859-015-0754-2⟩
Journal articles hal-01330611v1
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Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction

Ivanova Christa , Ramoni Jonas , Thiziri Aouam , Frischmann Alexa , Bernhard Seiboth , et al.
Biotechnology for Biofuels, 2017, 10, pp.209. ⟨10.1186/s13068-017-0897-7⟩
Journal articles hal-01592860v1
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BRANEnet : embedding multilayer networks for omics data integration

Surabhi Jagtap , Aurélie Pirayre , Frédérique Bidard , Laurent Duval , Fragkiskos Malliaros
BMC Bioinformatics, 2022, 23, pp.429. ⟨10.1186/s12859-022-04955-w⟩
Journal articles hal-03846890v1
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Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes

Etienne Jourdier , Lyam Baudry , Dante Poggi-Parodi , Yoan Vicq , Romain Koszul , et al.
Biotechnology for Biofuels, 2017, 10 (1), pp.151. ⟨10.1186/s13068-017-0837-6⟩
Journal articles hal-01581813v1
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Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype

Alexander Lichius , Frédérique Bidard , Franziska Buchholz , Stéphane Le Crom , Joel Martin , et al.
BMC Genomics, 2015, 16 (1), pp.326. ⟨10.1186/s12864-015-1526-0⟩
Journal articles hal-01149671v1

BraneMF : integration of biological networks for functional analysis of proteins

Surabhi Jagtap , Abdulkadir Çelikkanat , Aurélie Pirayre , Frédérique Bidard , Laurent Duval , et al.
Bioinformatics, 2022, 38 (24), pp.5383-5389. ⟨10.1093/bioinformatics/btac691⟩
Journal articles hal-03941785v1
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A RID-like putative cytosine methyltransferase homologue controls sexual development in the fungus Podospora anserina

Pierre Grognet , Hélène Timpano , Florian Carlier , Jinane Aït-Benkhali , Véronique Berteaux-Lecellier , et al.
PLoS Genetics, 2019, 15 (8), pp.e1008086. ⟨10.1371/journal.pgen.1008086⟩
Journal articles hal-02294921v1